Ocarina of Time is a timeless classic, and can still be thoroughly enjoyed in its original incarnation, but the 3DS remaster is the definitive version of the game. Gyroscopic aiming is also available for items like the Slingshot and Fairy Bow. Similarly, the Stone of Agony was replaced with the Shard of Agony, since the 3DS doesn't have rumble capabilities. Major annoyances like having to enter the pause screen to equip and remove the Iron Boots (one reason the Water Temple is the most hated Zelda dungeon) were fixed by use of the 3DS's touchscreen to allow for more intuitive inventory management. The 3DS version also makes improvements to gameplay, with consideration for the hardware. Not only does it include Master Quest, as previously noted, but it also has a boss challenge mode where players can fight individual bosses for new record times or face all of them one after another in a gauntlet with only five hearts.

The 3D effects may come down to personal preference, but the overall graphical fidelity for environment textures, character models, and lighting is unmatched by any other version of Ocarina of Time. The 3DS version is also the most feature-complete of the bunch. With help from the developers at Grezzo, Nintendo made significant graphical updates for this remastered version, which many fans want ported to the Switch. Ocarina of Time 3D is the most thorough reimagining of the N64 classic. The N64 classic was again made available on the GameCube the next year, when it was bundled in The Legend of Zelda Collector's Edition, which included the original Legend of Zelda, The Adventure of Link, Ocarina of Time, and Majora's Mask. Ocarina of Time remained in high regard through 2002, when Nintendo offered an enhanced GameCube version (along with Master Quest, which changed Ocarina of Time's original formula) as a pre-order bonus for The Wind Waker. For Nintendo as a whole, Super Mario 64 is generally the quintessential 3D milestone, but Ocarina of Time was Zelda's first foray into that new era of gaming and many consider it still unmatched in the series. The initial release of Ocarina of Time is a watershed moment for The Legend of Zelda. Each is perfectly playable, and will deliver an experience still widely considered to be one of the best in video game history, but the different versions of Ocarina of Time are not equal.

Since The Legend of Zelda: Ocarina of Time debuted on the Nintendo 64 in 1998, it has received numerous rereleases, including significant variations for the GameCube, 3DS, and Nintendo Switch Online.

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